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Refereed Archival Journal Publications


 [001] M. V. Boland, M. K. Markey, R. F. Murphy, “Automated recognition of patterns characteristic of subcellular structures in fluorescence microscopy images”, Cytometry 33:366-375 (November 1998).
BME_JOURNAL_1.pdf
View Download		   151k v. 8 Apr 17, 2009 5:09 PM Mia Markey
 [002] M. K. Markey, M. V. Boland, R. F. Murphy, “Toward objective selection of representative microscopy images”, Biophysical Journal 76:2230-2237 (April 1999).
BME_JOURNAL_2.pdf
View Download		   155k v. 5 Apr 17, 2009 5:10 PM Mia Markey
 [003] G. D. Tourassi, M. K. Markey, J. Y. Lo, C. E. Floyd, Jr., “A neural network approach to breast cancer diagnosis as a constraint satisfaction problem”, Medical Physics 28:804-811 (May 2001).
BME_JOURNAL_3.pdf
View Download		   164k v. 5 Apr 17, 2009 5:10 PM Mia Markey
 [004] G. D. Tourassi, E. D. Frederick, M. K. Markey, C. E. Floyd, Jr., "Application of the mutual information criterion for feature selection in computer-aided diagnosis", Medical Physics 28:2394-2402 (December 2001).
BME_JOURNAL_4.pdf
View Download		   90k v. 8 Apr 17, 2009 5:11 PM Mia Markey
 [005] J. Y. Lo, M. K. Markey, J. A. Baker, C. E. Floyd, Jr., “Cross-institutional evaluation of BI-RADS predictive model for mammographic diagnosis of breast cancer”, American Journal of Roentgenology 178:457-463 (February 2002).
BME_JOURNAL_5.pdf
View Download		   62k v. 5 Apr 17, 2009 5:12 PM Mia Markey
 [006] M. K. Markey, J. Y. Lo, R. Vargas-Voracek, G. D. Tourassi, C. E. Floyd, Jr., “Perceptron error surface analysis: a case study in breast cancer diagnosis”, Computers in Biology and Medicine 32:99-109 (March 2002).
BME_JOURNAL_6.pdf
View Download		   249k v. 5 Apr 17, 2009 5:13 PM Mia Markey
 [007] M. K. Markey, J. Y. Lo, C. E. Floyd, Jr., “Differences between the computer-aided diagnosis of breast masses and that of calcifications”, Radiology 223:489-493 (May 2002).
BME_JOURNAL_7.pdf
View Download		   115k v. 5 Apr 17, 2009 5:30 PM Mia Markey
 [008] M. K. Markey, J. Y. Lo, G. D. Tourassi, C. E. Floyd, Jr., “Self-organizing map for cluster analysis of a breast cancer database”, Artificial Intelligence in Medicine 27:113-127 (February 2003).
BME_JOURNAL_8.pdf
View Download		   218k v. 5 Apr 17, 2009 5:30 PM Mia Markey
 [009] M. K. Markey, G. D. Tourassi, C. E. Floyd, Jr., “Decision tree classification of proteins identified by mass spectrometry of blood serum samples from people with and without lung cancer”, Proteomics 3:1678-1679 (September 2003). (short communication)
BME_JOURNAL_9.pdf
View Download		   42k v. 2 Apr 17, 2009 5:30 PM Mia Markey
 [010] S. Y. Park, T. Collier, J. Aaron, M. K. Markey, R. Richards-Kortum, K. Sokolov, N. Mackinnon, C. MacAulay, L. Coghlan, A. Milbourne, M. Follen, “Multispectral digital microscopy for in vivo monitoring of oral neoplasia in the hamster cheek pouch model of carcinogenesis”, Optics Express 13:749-762 (February 2005).
BME_JOURNAL_10.pdf
View Download		   466k v. 2 Apr 17, 2009 5:30 PM Mia Markey
 [011] S. Gupta, M. K. Markey, “Correspondence in texture features between two mammographic views”, Medical Physics 32:1598-1606 (June 2005).
BME_JOURNAL_11.pdf
View Download		   67k v. 2 Apr 17, 2009 5:30 PM Mia Markey
 [012] M. K. Markey, G. D. Tourassi, M. Margolis, and D. M. DeLong, “Impact of missing data in evaluating artificial neural networks trained on complete data”, Computers in Biology and Medicine 36:516-525 (May 2006).
BME_JOURNAL_12.pdf
View Download		   165k v. 2 Apr 17, 2009 5:30 PM Mia Markey
 [013] S. Gupta, P. F. Chyn, M. K. Markey, “Breast cancer CADx based on BI-RADS descriptors from two mammographic views”, Medical Physics 33:1810-1817 (June 2006).
BME_JOURNAL_13.pdf
View Download		   269k v. 2 Apr 17, 2009 5:30 PM Mia Markey
 [014] M. P. Sampat, G. J. Whitman, T. W. Stephens, L. D. Broemeling, N. A. Heger, A. C. Bovik, M. K. Markey, “The reliability of measuring physical characteristics of spiculated masses on mammography”, British Journal of Radiology 79:S134-S140 (December 2006).
BME_JOURNAL_14.pdf
View Download		   597k v. 2 Apr 17, 2009 5:30 PM Mia Markey
 [015] M. S. Kim, G. P. Reece, E. K. Beahm, M. J. Miller, E. N. Atkinson, M. K. Markey, “Objective assessment of aesthetic outcomes of breast cancer treatment: measuring ptosis from clinical photographs”, Computers in Biology and Medicine 37:49-59 (January 2007).
BME_JOURNAL_15.pdf
View Download		   432k v. 2 Apr 17, 2009 5:30 PM Mia Markey
 [016] E. A. Fischer, M. A. Friedman, M. K. Markey, “Empirical comparison of tests for differential expression on time-series microarray experiments”, Genomics 89:460-470 (April 2007).
BME_JOURNAL_16.pdf
View Download		   1240k v. 2 Apr 17, 2009 5:30 PM Mia Markey
 [017] M. P. Sampat, G. J. Whitman, A. C. Bovik, M. K. Markey, “Comparison of algorithms to enhance spicules of spiculated masses on mammography”, Journal of Digital Imaging 21:9-17 (March 2008).
BME_JOURNAL_17.pdf
View Download		   491k v. 2 Apr 17, 2009 5:30 PM Mia Markey
 [018] H. Shin, B. Sheu, M. Joseph, M. K. Markey, “Guilt-by-association feature selection: identifying biomarkers from proteomic profiles”, Journal of Biomedical Informatics 41:124-136 (February 2008).
BME_JOURNAL_18.pdf
View Download		   424k v. 2 Apr 17, 2009 5:30 PM Mia Markey
 [019] H. Shin, M. Mutlu, J. M. Koomen, M. K. Markey, “Parametric power spectral density analysis of noise from instrumentation in MALDI TOF mass spectrometry”, Cancer Informatics 3:317-328 (September 2007).
BME_JOURNAL_19.pdf
View Download		   510k v. 2 Apr 17, 2009 5:30 PM Mia Markey
 [020] M. S. Kim, W. N. Rodney, T. Cooper, C. Kite, G. P. Reece, M. K. Markey, “Toward quantifying the aesthetic outcomes of breast cancer treatment: comparison of clinical photography and colorimetry”, Journal of Evaluation in Clinical Practice (in press).
BME_JOURNAL_020.pdf
View Download		   917k v. 2 Apr 30, 2009 3:30 PM Mia Markey
 [021] S. Y. Park, M. Follen, A. Milbourne, H. Rhodes, A. Malpica, N. MacKinnon, C. MacAulay, M. K. Markey, R. Richards-Kortum, “Automated image analysis of digital colposcopy for the detection of cervical neoplasia”, Journal of Biomedical Optics 13:014029 (January 2008).
BME_JOURNAL_21.pdf
View Download		   1635k v. 2 Apr 17, 2009 5:35 PM Mia Markey
 [022] L. T. Nieman, C. W. Kan, A. Gillenwater, M. K. Markey, K. Sokolov, “Probing local tissue changes in the oral cavity for the early detection of cancer using oblique polarized reflectance spectroscopy: a pilot clinical trial”, Journal of Biomedical Optics 13:024011 (March 2008).
BME_JOURNAL_22.pdf
View Download		   899k v. 2 Apr 17, 2009 6:25 PM Mia Markey
 [023] M. P. Sampat, A. C. Bovik, G. J. Whitman, M. K. Markey, “A model-based framework for the detection of spiculated lesions on mammography”, Medical Physics 35:0094-2405 (May 2008).
BME_JOURNAL_23.pdf
View Download		   1154k v. 2 Apr 17, 2009 6:33 PM Mia Markey
 [024] M. P. Sampat, A. C. Patel, Y. Wang, S. Gupta, C. W. Kan, A. C. Bovik, M. K. Markey, “Indices for three-class classification performance assessment – an empirical comparison”, IEEE Transactions on Information Technology in Biomedicine 13:300-312 (May 2009).
BME_JOURNAL_024.pdf
View Download		   441k v. 2 Aug 11, 2009 2:39 PM Mia Markey
COBWEB.m
Download		   1k v. 2 Nov 13, 2009 10:21 AM Ashish Hamirani
MHTM.m
Download		   1k v. 2 Nov 13, 2009 10:21 AM Ashish Hamirani
OVA.m
Download		   2k v. 2 Nov 13, 2009 10:21 AM Ashish Hamirani
pairwise.m
Download		   3k v. 2 Nov 13, 2009 10:21 AM Ashish Hamirani
README.txt
Download		   1k v. 2 Nov 13, 2009 10:21 AM Ashish Hamirani
ROCPoints.m
Download		   1k v. 2 Nov 13, 2009 10:21 AM Ashish Hamirani
roctrap.m
Download		   1k v. 2 Nov 13, 2009 10:21 AM Ashish Hamirani
TWRVUS.m
Download		   2k v. 2 Nov 13, 2009 10:21 AM Ashish Hamirani
 [025] M. P. Sampat, Z. Wang, S. Gupta, A. C. Bovik, and M. K. Markey. "Complex Wavelet Structural Similarity: a new image similarity index", IEEE Transactions on Image Processing 18:2385-2401 (November 2009).
BME_Journal_025.pdf
View Download		   3126k v. 2 Nov 13, 2009 9:39 AM Ashish Hamirani
 [026] G. M. Pocock, R. G. Aranibar, N. J. Kemp, C. J. Specht, M. K. Markey, H. G. Rylander III, “The relationship between retinal ganglion cell axon constituents and fiber layer birefringence in the primate retinal nerve”, Investigative Ophthalmology and Visual Sciences 50:5238-5246 (November 2009).
BME_JOURNAL_026.pdf
View Download		   4111k v. 2 Nov 13, 2009 3:10 PM Mia Markey